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MATLAB has a "[http://www.mathworks.com/access/helpdesk/help/toolbox/stats/mle.html mle]" function for maximum likelihood estimation. I think that this function is useful to verify the result of hw2 if you have MATLAB. I try to find the effect of the sample size in MLE using "mle" function because the number of samples is critical for estimation. To do this, I generate samples from normal distribution with mean as 0 and std as 5. The below graph shows the results of MLE according to the number of samples.  
 
MATLAB has a "[http://www.mathworks.com/access/helpdesk/help/toolbox/stats/mle.html mle]" function for maximum likelihood estimation. I think that this function is useful to verify the result of hw2 if you have MATLAB. I try to find the effect of the sample size in MLE using "mle" function because the number of samples is critical for estimation. To do this, I generate samples from normal distribution with mean as 0 and std as 5. The below graph shows the results of MLE according to the number of samples.  
  
[[Image:mle_samples.jpg]]
+
[[Image:Mle samples.jpg]]  
  
The code for this graph is like below.
+
The code for this graph is like below.  
  
 
     samples_step = 3;
 
     samples_step = 3;
    num_samples = samples_step:samples_step:10000;
+
  num_samples = samples_step:samples_step:10000;
    len = length(num_samples);
+
  len = length(num_samples);
    mu = 0;
+
  mu = 0;
    sigma = 5;
+
  sigma = 5;
    muhat = zeros(1, len);
+
  muhat = zeros(1, len);
    sigmahat = zeros(1, len);
+
  sigmahat = zeros(1, len);
    for x = num_samples
+
  for x = num_samples
        data = mu + sigma * randn(1, x);
+
      data = mu + sigma * randn(1, x);
        phat = mle(data(1, :));
+
      phat = mle(data(1, :));
        muhat(1, x/samples_step) = phat(1);
+
      muhat(1, x/samples_step) = phat(1);
        sigmahat(1, x/samples_step) = phat(2);
+
      sigmahat(1, x/samples_step) = phat(2);
    end
+
  end
    plot(num_samples, muhat);
+
  plot(num_samples, muhat);
    hold on;
+
  hold on;
    plot(num_samples, sigmahat);
+
  plot(num_samples, sigmahat);
  
 +
<br> --[[User:Han84|Han84]] 22:49, 2 April 2010 (UTC)
  
--[[User:Han84|Han84]] 22:49, 2 April 2010 (UTC)
+
Need real database? Look it up in this website:  
  
Need real database? Look it up in this website:
+
http://archive.ics.uci.edu/ml/datasets.html
  
http://archive.ics.uci.edu/ml/datasets.html
+
have fun!
  
have fun!
+
Golsa
  
Golsa
+
<br>
  
 +
== Cholesky Decomposition  ==
  
 
+
I wrote this MATLAB / FreeMat code to compute the Cholesky Decomposition of a matrix. The matrix '''A''' should be real and positive definite.  
== Cholesky Decomposition ==
+
 
+
I wrote this MATLAB / FreeMat code to compute the Cholesky Decomposition of a matrix.   The matrix <b>A</b> should be real and positive definite.
+
  
 
     function L = cholesky(A)
 
     function L = cholesky(A)
        N = length(A);
+
      N = length(A);
        L = zeros(N);
+
      L = zeros(N);
        for i=1:N
+
      for i=1:N
            for j=1:i-1
+
          for j=1:i-1
                L(i,j) = 1/L(j,j) * (A(i,j) - L(i,1:j-1)*L(j,1:j-1)');
+
              L(i,j) = 1/L(j,j) * (A(i,j) - L(i,1:j-1)*L(j,1:j-1)');
            end
+
          end
            L(i,i) = sqrt(A(i,i) - L(i,1:i-1)*L(i,1:i-1)');
+
          L(i,i) = sqrt(A(i,i) - L(i,1:i-1)*L(i,1:i-1)');
        end
+
      end
    end
+
  end
  
You can use the resulting lower triangular matrix <b>L</b> to generate multivariate normal samples with covariance given by the matrix <b>A</b> by computing  
+
You can use the resulting lower triangular matrix '''L''' to generate multivariate normal samples with covariance given by the matrix '''A''' by computing  
  
<b>X</b> = <b><math>\mu</math></b> + <b>L Z</b>, where <b>Z</b> is iid standard normal.
+
'''X''' = '''<span class="texhtml">μ</span>''' + '''L Z''', where '''Z''' is iid standard normal.  
  
[[User:Pritchey|Pritchey]] 20:28, 9 April 2010 (UTC)
+
[[User:Pritchey|Pritchey]] 20:28, 9 April 2010 (UTC)  
  
 +
<br>
  
== Hidden Markov Models ==
+
== Hidden Markov Models ==
As Prof. Boutin approved my work on HMM for Hw2, I'll put some references for HMM here.
+
For this homework, I'm going to learn the HMM model parameters with the Baum-Welch algorithm, which is a generalized version of EM algorithm. An EM algorithm tries to maximize the likelihood function even though one has variables that cannot be observed. During the implementation, I collected some intuitive tutorials on how to implement the HMM and Baum-Welch algorithm, and will share it here.
+
  
http://www.indiana.edu/~iulg/moss/hmmcalculations.pdf
+
As Prof. Boutin approved my work on HMM for Hw2, I'll put some references for HMM here. For this homework, I'm going to learn the HMM model parameters with the Baum-Welch algorithm, which is a generalized version of EM algorithm. An EM algorithm tries to maximize the likelihood function even though one has variables that cannot be observed. During the implementation, I collected some intuitive tutorials on how to implement the HMM and Baum-Welch algorithm, and will share it here.  
This is a simple example demonstrating how Baum-Welch runs step by step.
+
  
http://www.cs.brown.edu/research/ai/dynamics/tutorial/Documents/HiddenMarkovModels.html
+
http://www.indiana.edu/~iulg/moss/hmmcalculations.pdf This is a simple example demonstrating how Baum-Welch runs step by step.  
This is a good reference on how to name your variables when programming it.
+
  
http://www.cs.ubc.ca/~murphyk/Software/HMM/rabiner.pdf
+
http://www.cs.brown.edu/research/ai/dynamics/tutorial/Documents/HiddenMarkovModels.html This is a good reference on how to name your variables when programming it.  
This is the classical paper which most of the existing HMM software packages are based on.
+
  
 +
http://www.cs.ubc.ca/~murphyk/Software/HMM/rabiner.pdf This is the classical paper which most of the existing HMM software packages are based on.
 +
 +
<br>
  
 
----
 
----
[[ 2010 Spring ECE 662 mboutin|Back to 2010 Spring ECE 662 mboutin]]
+
 
 +
<br>
 +
 
 +
Don't forget the previous contributions on the ECE662 website. For example, for HW2 I think there is a nice, helpful summary/comparison between MLE and BPE at [https://www.projectrhea.org/rhea/index.php/Parametric_Estimators_Old_Kiwi here].
 +
--[[User:Gmodeloh|Gmodeloh]] 14:25, 13 April 2010 (UTC)
 +
 +
 
 +
[[2010 Spring ECE 662 mboutin|Back to 2010 Spring ECE 662 mboutin]]

Revision as of 09:25, 13 April 2010

MATLAB has a "mle" function for maximum likelihood estimation. I think that this function is useful to verify the result of hw2 if you have MATLAB. I try to find the effect of the sample size in MLE using "mle" function because the number of samples is critical for estimation. To do this, I generate samples from normal distribution with mean as 0 and std as 5. The below graph shows the results of MLE according to the number of samples.

Mle samples.jpg

The code for this graph is like below.

   samples_step = 3;
  num_samples = samples_step:samples_step:10000;
  len = length(num_samples);
  mu = 0;
  sigma = 5;
  muhat = zeros(1, len);
  sigmahat = zeros(1, len);
  for x = num_samples
      data = mu + sigma * randn(1, x);
      phat = mle(data(1, :));
      muhat(1, x/samples_step) = phat(1);
      sigmahat(1, x/samples_step) = phat(2);
  end
  plot(num_samples, muhat);
  hold on;
  plot(num_samples, sigmahat);


--Han84 22:49, 2 April 2010 (UTC)

Need real database? Look it up in this website:

http://archive.ics.uci.edu/ml/datasets.html

have fun!

Golsa


Cholesky Decomposition

I wrote this MATLAB / FreeMat code to compute the Cholesky Decomposition of a matrix. The matrix A should be real and positive definite.

   function L = cholesky(A)
      N = length(A);
      L = zeros(N);
      for i=1:N
          for j=1:i-1
              L(i,j) = 1/L(j,j) * (A(i,j) - L(i,1:j-1)*L(j,1:j-1)');
          end
          L(i,i) = sqrt(A(i,i) - L(i,1:i-1)*L(i,1:i-1)');
      end
  end

You can use the resulting lower triangular matrix L to generate multivariate normal samples with covariance given by the matrix A by computing

X = μ + L Z, where Z is iid standard normal.

Pritchey 20:28, 9 April 2010 (UTC)


Hidden Markov Models

As Prof. Boutin approved my work on HMM for Hw2, I'll put some references for HMM here. For this homework, I'm going to learn the HMM model parameters with the Baum-Welch algorithm, which is a generalized version of EM algorithm. An EM algorithm tries to maximize the likelihood function even though one has variables that cannot be observed. During the implementation, I collected some intuitive tutorials on how to implement the HMM and Baum-Welch algorithm, and will share it here.

http://www.indiana.edu/~iulg/moss/hmmcalculations.pdf This is a simple example demonstrating how Baum-Welch runs step by step.

http://www.cs.brown.edu/research/ai/dynamics/tutorial/Documents/HiddenMarkovModels.html This is a good reference on how to name your variables when programming it.

http://www.cs.ubc.ca/~murphyk/Software/HMM/rabiner.pdf This is the classical paper which most of the existing HMM software packages are based on.




Don't forget the previous contributions on the ECE662 website. For example, for HW2 I think there is a nice, helpful summary/comparison between MLE and BPE at here. --Gmodeloh 14:25, 13 April 2010 (UTC)


Back to 2010 Spring ECE 662 mboutin

Alumni Liaison

Recent Math PhD now doing a post-doctorate at UC Riverside.

Kuei-Nuan Lin